Vesiclepedia: EVQuant results

Results shown for selected experiment:

Experiment ID 14

PubMed ID 30863515

Identification method Protein

Extracellular vesicle type Extracellular vesicles

MISEV Small EVs

Species Homo sapiens

Experiment description Proteomic analysis reveals procoagulant properties of cigarette smoke-induced extracellular vesicles

Sample Lung epithelial cells

Sample name CSE128

Isolation/purification methods Centrifugal ultrafiltration
Size exclusion chromatography

Methods used in the study Flow cytometry
Mass spectrometry

Flotation density -

Authors Benedikter BJ, Bouwman FG, Heinzmann ACA, Vajen T, Mariman EC, Wouters EFM, Savelkoul PHM, Koenen RR, Rohde GGU, van Oerle R, Spronk HM, Stassen FRM.

Journal name J Extracell Vesicles

Publication year 2019

EV-TRACK -

   Contents identified in selected experiment:

   Top 200 abundant gene(s) for selected experiment:

   Other experiments from same study (PubMed ID):

PubMed ID Species Experiment description Sample Sample name Identifications Isolation methods Vesicle type MISEV Quantification

1 30863515 Homo sapiens Proteomic analysis reveals procoagulant properties of cigarette smoke-induced extracellular vesicles Lung epithelial cells Control126 Protein Centrifugal ultrafiltration
Size exclusion chromatography Extracellular vesicles Small EVs EVQuant

2 30863515 Homo sapiens Proteomic analysis reveals procoagulant properties of cigarette smoke-induced extracellular vesicles Lung epithelial cells CSE130 Protein Centrifugal ultrafiltration
Size exclusion chromatography Extracellular vesicles Small EVs EVQuant

3 30863515 Homo sapiens Proteomic analysis reveals procoagulant properties of cigarette smoke-induced extracellular vesicles Lung epithelial cells CSE127 Protein Centrifugal ultrafiltration
Size exclusion chromatography Extracellular vesicles Small EVs EVQuant

4 30863515 Homo sapiens Proteomic analysis reveals procoagulant properties of cigarette smoke-induced extracellular vesicles Lung epithelial cells CSE129 Protein Centrifugal ultrafiltration
Size exclusion chromatography Extracellular vesicles Small EVs EVQuant

5 30863515 Homo sapiens Proteomic analysis reveals procoagulant properties of cigarette smoke-induced extracellular vesicles Lung epithelial cells CSE131 Protein Centrifugal ultrafiltration
Size exclusion chromatography Extracellular vesicles Small EVs EVQuant

6 30863515 Homo sapiens Proteomic analysis reveals procoagulant properties of cigarette smoke-induced extracellular vesicles Lung epithelial cells Control129 Protein Centrifugal ultrafiltration
Size exclusion chromatography Extracellular vesicles Small EVs EVQuant

7 30863515 Homo sapiens Proteomic analysis reveals procoagulant properties of cigarette smoke-induced extracellular vesicles Lung epithelial cells CSE128 Protein Centrifugal ultrafiltration
Size exclusion chromatography Extracellular vesicles Small EVs EVQuant

8 30863515 Homo sapiens Proteomic analysis reveals procoagulant properties of cigarette smoke-induced extracellular vesicles Lung epithelial cells Control128 Protein Centrifugal ultrafiltration
Size exclusion chromatography Extracellular vesicles Small EVs EVQuant

9 30863515 Homo sapiens Proteomic analysis reveals procoagulant properties of cigarette smoke-induced extracellular vesicles Lung epithelial cells Control127 Protein Centrifugal ultrafiltration
Size exclusion chromatography Extracellular vesicles Small EVs EVQuant

10 30863515 Homo sapiens Proteomic analysis reveals procoagulant properties of cigarette smoke-induced extracellular vesicles Lung epithelial cells Control130 Protein Centrifugal ultrafiltration
Size exclusion chromatography Extracellular vesicles Small EVs EVQuant

   Experiments in which GPI is identified:

PubMed ID Species Experiment description Sample Sample name Identifications Isolation methods Vesicle type MISEV Quantification

1 33991177 Homo sapiens Cancer stem cell marker DCLK1 reprograms small extracellular vesicles toward migratory phenotype in gastric cancer cells Gastric cancer cells MKN1 - 100K pellet Protein Differential centrifugation
Ultracentrifugation Small extracellular vesicles Small EVs EVQuant

2 33661579 Homo sapiens Pannexin-1 channel regulates nuclear content packaging into apoptotic bodies and their size T lymphoblast Jurkat T cells Protein Differential centrifugation Apoptotic bodies Large EVs EVQuant

3 32487994 Homo sapiens Plasma-derived extracellular vesicles from Plasmodium vivax patients signal spleen fibroblasts via NF-kB facilitating parasite cytoadherence Plasma Healthy donors Protein Centrifugation
Size exclusion chromatography Extracellular vesicles Small EVs EVQuant

4 33991177 Homo sapiens Cancer stem cell marker DCLK1 reprograms small extracellular vesicles toward migratory phenotype in gastric cancer cells Gastric cancer cells MKN1 - 100K pellet Protein Differential centrifugation
Ultracentrifugation Small extracellular vesicles Small EVs EVQuant

5 34108659 Homo sapiens Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker Pancreatic cancer cells PANC-1 - Exo-rich fractions 1-6 pooled Protein Differential centrifugation
Filtration
Ultracentrifugation
OptiPrep density gradient centrifugation Exosomes Small EVs EVQuant

6 30863515 Homo sapiens Proteomic analysis reveals procoagulant properties of cigarette smoke-induced extracellular vesicles Lung epithelial cells Control129 Protein Centrifugal ultrafiltration
Size exclusion chromatography Extracellular vesicles Small EVs EVQuant

7 30863515 Homo sapiens Proteomic analysis reveals procoagulant properties of cigarette smoke-induced extracellular vesicles Lung epithelial cells CSE128 Protein Centrifugal ultrafiltration
Size exclusion chromatography Extracellular vesicles Small EVs EVQuant

8 34108659 Homo sapiens Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker Breast cancer cells MDA-MB-231 - Exo-rich fractions 7-10 pooled Protein Differential centrifugation
Filtration
Ultracentrifugation
Size exclusion chromatography Exosomes Small EVs EVQuant

9 30863515 Homo sapiens Proteomic analysis reveals procoagulant properties of cigarette smoke-induced extracellular vesicles Lung epithelial cells CSE130 Protein Centrifugal ultrafiltration
Size exclusion chromatography Extracellular vesicles Small EVs EVQuant

10 32938681 Homo sapiens Annexin A1-dependent tethering promotes extracellular vesicle aggregation revealed with single-extracellular vesicle analysis Smooth muscle cells Carotid artery-derived primary smooth muscle cells Protein Differential centrifugation
Ultracentrifugation Extracellular vesicles EVs EVQuant

11 32487994 Homo sapiens Plasma-derived extracellular vesicles from Plasmodium vivax patients signal spleen fibroblasts via NF-kB facilitating parasite cytoadherence Plasma Plasmodium vivax (Malaria) patients Protein Centrifugation
Size exclusion chromatography Extracellular vesicles Small EVs EVQuant

12 35333565 Homo sapiens LAMP2A regulates the loading of proteins into exosomes Retinal pigment epithelial cells ARPE-19-Cas9-WT Protein Differential centrifugation
Filtration
Ultracentrifugation Small extracellular vesicles Small EVs EVQuant

13 34108659 Homo sapiens Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker Pancreatic cancer cells PANC-1 - Exo-rich fractions 7-10 pooled Protein Differential centrifugation
Filtration
Ultracentrifugation
Size exclusion chromatography Exosomes Small EVs EVQuant

14 34108659 Homo sapiens Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker Embryonic kidney cells HEK293T - Exo-rich fractions 7-10 pooled Protein Differential centrifugation
Filtration
Ultracentrifugation
Size exclusion chromatography Exosomes Small EVs EVQuant

15 30863515 Homo sapiens Proteomic analysis reveals procoagulant properties of cigarette smoke-induced extracellular vesicles Lung epithelial cells CSE131 Protein Centrifugal ultrafiltration
Size exclusion chromatography Extracellular vesicles Small EVs EVQuant

16 32938681 Homo sapiens Annexin A1-dependent tethering promotes extracellular vesicle aggregation revealed with single-extracellular vesicle analysis Smooth muscle cells Carotid artery-derived primary smooth muscle cells Protein Differential centrifugation
Ultracentrifugation Extracellular vesicles EVs EVQuant

17 34108659 Homo sapiens Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker Breast cancer cells MDA-MB-231 - Exo-rich fractions 1-6 pooled Protein Differential centrifugation
Filtration
Ultracentrifugation
OptiPrep density gradient centrifugation Exosomes Small EVs EVQuant

18 30863515 Homo sapiens Proteomic analysis reveals procoagulant properties of cigarette smoke-induced extracellular vesicles Lung epithelial cells CSE127 Protein Centrifugal ultrafiltration
Size exclusion chromatography Extracellular vesicles Small EVs EVQuant

19 35333565 Homo sapiens LAMP2A regulates the loading of proteins into exosomes Retinal pigment epithelial cells ARPE-19-KO-LAMP2A Protein Differential centrifugation
Filtration
Ultracentrifugation Small extracellular vesicles Small EVs EVQuant

20 33661579 Homo sapiens Pannexin-1 channel regulates nuclear content packaging into apoptotic bodies and their size T lymphoblast Jurkat T cells Protein Differential centrifugation Apoptotic bodies Large EVs EVQuant

21 30863515 Homo sapiens Proteomic analysis reveals procoagulant properties of cigarette smoke-induced extracellular vesicles Lung epithelial cells Control126 Protein Centrifugal ultrafiltration
Size exclusion chromatography Extracellular vesicles Small EVs EVQuant

22 34108659 Homo sapiens Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker Embryonic kidney cells HEK293T - Exo-rich fractions 1-6 pooled Protein Differential centrifugation
Filtration
Ultracentrifugation
OptiPrep density gradient centrifugation Exosomes Small EVs EVQuant

23 30863515 Homo sapiens Proteomic analysis reveals procoagulant properties of cigarette smoke-induced extracellular vesicles Lung epithelial cells Control130 Protein Centrifugal ultrafiltration
Size exclusion chromatography Extracellular vesicles Small EVs EVQuant

24 33661579 Homo sapiens Pannexin-1 channel regulates nuclear content packaging into apoptotic bodies and their size T lymphoblast Jurkat T cells Protein Differential centrifugation Apoptotic bodies Large EVs EVQuant

25 30863515 Homo sapiens Proteomic analysis reveals procoagulant properties of cigarette smoke-induced extracellular vesicles Lung epithelial cells CSE129 Protein Centrifugal ultrafiltration
Size exclusion chromatography Extracellular vesicles Small EVs EVQuant

26 33991177 Homo sapiens Cancer stem cell marker DCLK1 reprograms small extracellular vesicles toward migratory phenotype in gastric cancer cells Gastric cancer cells MKN1 - 100K pellet Protein Differential centrifugation
Ultracentrifugation Small extracellular vesicles Small EVs EVQuant

27 30863515 Homo sapiens Proteomic analysis reveals procoagulant properties of cigarette smoke-induced extracellular vesicles Lung epithelial cells Control127 Protein Centrifugal ultrafiltration
Size exclusion chromatography Extracellular vesicles Small EVs EVQuant

	PubMed ID	Species	Experiment description	Sample	Sample name	Identifications	Isolation methods	Vesicle type	MISEV	Quantification
1	30863515	Homo sapiens	Proteomic analysis reveals procoagulant properties of cigarette smoke-induced extracellular vesicles	Lung epithelial cells	Control126	Protein	Centrifugal ultrafiltration Size exclusion chromatography	Extracellular vesicles	Small EVs	EVQuant
2	30863515	Homo sapiens	Proteomic analysis reveals procoagulant properties of cigarette smoke-induced extracellular vesicles	Lung epithelial cells	CSE130	Protein	Centrifugal ultrafiltration Size exclusion chromatography	Extracellular vesicles	Small EVs	EVQuant
3	30863515	Homo sapiens	Proteomic analysis reveals procoagulant properties of cigarette smoke-induced extracellular vesicles	Lung epithelial cells	CSE127	Protein	Centrifugal ultrafiltration Size exclusion chromatography	Extracellular vesicles	Small EVs	EVQuant
4	30863515	Homo sapiens	Proteomic analysis reveals procoagulant properties of cigarette smoke-induced extracellular vesicles	Lung epithelial cells	CSE129	Protein	Centrifugal ultrafiltration Size exclusion chromatography	Extracellular vesicles	Small EVs	EVQuant
5	30863515	Homo sapiens	Proteomic analysis reveals procoagulant properties of cigarette smoke-induced extracellular vesicles	Lung epithelial cells	CSE131	Protein	Centrifugal ultrafiltration Size exclusion chromatography	Extracellular vesicles	Small EVs	EVQuant
6	30863515	Homo sapiens	Proteomic analysis reveals procoagulant properties of cigarette smoke-induced extracellular vesicles	Lung epithelial cells	Control129	Protein	Centrifugal ultrafiltration Size exclusion chromatography	Extracellular vesicles	Small EVs	EVQuant
7	30863515	Homo sapiens	Proteomic analysis reveals procoagulant properties of cigarette smoke-induced extracellular vesicles	Lung epithelial cells	CSE128	Protein	Centrifugal ultrafiltration Size exclusion chromatography	Extracellular vesicles	Small EVs	EVQuant
8	30863515	Homo sapiens	Proteomic analysis reveals procoagulant properties of cigarette smoke-induced extracellular vesicles	Lung epithelial cells	Control128	Protein	Centrifugal ultrafiltration Size exclusion chromatography	Extracellular vesicles	Small EVs	EVQuant
9	30863515	Homo sapiens	Proteomic analysis reveals procoagulant properties of cigarette smoke-induced extracellular vesicles	Lung epithelial cells	Control127	Protein	Centrifugal ultrafiltration Size exclusion chromatography	Extracellular vesicles	Small EVs	EVQuant
10	30863515	Homo sapiens	Proteomic analysis reveals procoagulant properties of cigarette smoke-induced extracellular vesicles	Lung epithelial cells	Control130	Protein	Centrifugal ultrafiltration Size exclusion chromatography	Extracellular vesicles	Small EVs	EVQuant